From COBB tuning website notes on the AccessPort:
MUST USE FACTORY INTAKE SYSTEM and FACTORY INTAKE FILTER. NO
OTHER AFTERMARKET INTAKES, OR DROP-IN REPLACEMENT AIR FILTERS ARE CERTIFIED
COMPATIBLE WITH THIS CALIBRATION. THE USE OF A DROP-IN REPLACEMENT AIR FILTER WILL
ALLOW THE VEHICLE TO RUN LEANER THAN DESIRED, WHICH CAN CAUSE ENGINE DAMAGE.
There is a special map for the AccessPort for the Perin drop in filter.
cobb's maps are very conservative and their directions for running the maps are also very conservative, mainly because they have an image to protect. their stage 1 map is pretty much garbage anyway, they spent most of their development on the stage 2 map since it actually makes real power.
the addition of a panel filter isn't like a CAI; the MAF sensor remains in the stock location with stock diameter of piping around it. if the panel filter allows more air to pass through it into the engine, the sensor will sense it and adjust fueling accordingly. i ran an AVO panel both in my stage 1 and in my current stage 2 setup with no discernible changes in AFRs. as a matter of fact, when i put the filter on with my stage 2 map, it actually resolved a nagging knock issue that i had.
also, there is no special cobb map for the perrin filter.. other map makers(perrin, rallitek, etc) allow the use of a panel filter with their maps.